Genetic variability of Tropical Milking Criollo cattle of Mexico estimated from genealogy information
DOI:
https://doi.org/10.17533/udea.rccp.v31n3a04Keywords:
cattle populations, conservation, hot climates, originating genes, pedigree analysisAbstract
Background: Genetic variability of populations is essential for their genetic conservation and improvement, and genealogy analysis is a useful tool to estimate it. Objective: To determine genetic variability and inbreeding levels in Tropical Milking Criollo (LT). Methods: This study analyzed the genealogy of LT using the ENDOG software. Registration certificates of 3,427 LT animals born between 1945 and 2013, and from 608 born between 1950 and 2013 were used. Two populations were defined: the first one with all registered animals (PLT), and the second with nucleus animals (PCP). Results: Estimates for PLT and PCP were: founders 890, 114; ancestors 855, 102; effective founders 111, 43; effective ancestors 72, 26, and effective population size 68.1 and 64.6, respectively. Inbreeding coefficients were 4.32 and 3.48% for the highest genetic integrity index; and the average relatedness (AR) coefficients were 1.19 and 5.55 for PLT and PCP, respectively. Genealogy depth was shallow in both populations, with full equivalent generations of 2.00 and 3.53. Global generation intervals were about seven years. Conclusions: The LT population is not endangered and its genetic improvement program should continue.
Downloads
References
AMCROLET. Catálogo Criollo Lechero Tropical. Villahermosa, Tabasco, México. Asociación Mexicana de Criadores de Ganado Romosinuano y Lechero Tropical, AC; 2015.
Boichard D, Maignel L, Verrier É. Analyse généalogique des races bovines laitières françaises. Inst Nat RechAgr 1996; 9(5):323-335.
Boichard D, Maignel L, Verrier E. The value of using probabilities of gene origin to measure genetic variability in a population. Genet Select Evol 1997; 29: 5-23.
Cervantes I, Gutiérrez JP, Molina A, Goyache F, Valera M. Genealogical analyses in open populations: the case of three Arab-derived Spanish horse breeds. J Anim Breed Genet 2009; 126(5):335–347.
Corrales R, Näsholm A, Malmfors B, Philipsson J. Population structure of Reyna Creole cattle in Nicaragua. Trop Anim Health Prod 2010; 42(7):1427–1434.
Curik I, Ferenčaković M, Sölkner J. Inbreeding and runs of homozygosity: A possible solution to an old problem. Livest Sci 2014; 166: 26–34.
de Alba J. El libro de los bovinos criollos de América. 1ª ed. Texcoco, México: Colegio de Postgraduados; 2011.
Delgadillo, A. Análisis de pedigrí en la determinación de estructura y diversidad genética de poblaciones bovinas para carne mexicanas. Tesis de Maestría en Ciencias: Universidad Autónoma Chapingo. México; 2014.
Domínguez V, Rodríguez FA, Núñez DR, Ramírez VR, Ortega GJA, Ruíz FA. Análisis del pedigrí y efectos de la consanguinidad en el comportamiento del ganado de lidia mexicano. Arch Zootec 2010; 59(225): 63-72.
Falconer DS, Mackay TFC. Introduction to quantitative genetics. London, England: Logman; 1996.
Food and Agriculture Organization of the United Nations (FAO). Secondary guidelines for development of national farm animal genetic resources management plans: management of small populations at risk. Rome Italy; 1998.
Food and Agriculture Organization of the United Nations (FAO). In vivo conservation of animal genetic resources. Animal Production and Health Guidelines 14. Rome Italy; 2013.
Food and Agriculture Organization of the United Nations (FAO). The second report on the state of the world’s animal genetic resources for food and agriculture. In: Scherf BD, Pilling D. editors. Commission on Genetic Resources for Food and Agriculture. Rome Italy; 2015.
Głażewska I. Genetic diversity in Polish hounds estimated by pedigree analysis. Livest Sci 2008; 113(2-3):296–301.
Goyache F, Gutiérrez JP, Fernandez I, Gómez E, Álvarez I, Díez J, Royo LJ. Using pedigree information to monitor genetic variability of endangered populations: the Xalda sheep breed of Asturias as an example. J Anim Breed Genet 2003; 120(2):95-103.
Gutiérrez JP, Altamirra J, Díaz C, Quintanila R, Cañon J, Piedrafita J. Pedigree analysis of eight Spanish beef cattle breeds. Genet Sel Evol 2003; 35(1):43-63.
Gutiérrez JP, Goyache F. A note on ENDOG: A computer program for analyzing pedigree information. J Anim Breed Genet 2005; 122(3):172-176.
Gutiérrez JP, Goyache F, Cervantes I.ENDOG v4.8. A computer program for monitoring genetic variability of populations using pedigree information. User’s Guide. Universidad Complutense de Madrid España; 2010.
Hazuchová E, Kadlečík O, Pavlík I, Kasarda R, Žitný J. The assessment of genetic diversity and analysis of pedigree completeness in purebred Slovak Spotted cattle. Acta Agr Slov 2012a; Suppl 3:131–135.
Hazuchová E, Kadlečík O, Pavlík I, Kasarda R. Evaluation of genetic diversity using parameters based on probability of gene origin in the Slovak Spotted bulls. Anim Sci Biotech 2012b; 45:181-184.
Kliman R, Sheehy B, Schultz J. Genetic drift and effective population size. Nat Edu 2008; 1(3): 3.
Korrida A, Gutiérrez JP, Samuel EA, Amal AA. Genetic variability characterization of the Moroccan Houbara Bustard (Chlamydotis undulata undulata) inferred from pedigree analysis. Zoo Biol 2013; 32(4):366-373.
Lacy R. Analysis of founder representation in pedigrees: founder equivalents and founder genome equivalents. Zoo Biol 1989; 8(2):111-123.
Leroy G. Genetic diversity, inbreeding and breeding practices in dogs: Results from pedigree analyses. Vet J 2011; 189(2):177–182.
MacCluer J, Boyce B, Dyke L, Weitzkamp D, Pfenning A, Parsons C. Inbreeding and pedigree structure in Standardbred horses. J Hered 1983; 74(6):394-399.
Martínez RA, García D, Gallegos JL, Onofre G, Pérez J, Cañón J. Genetic variability in Colombian Creole cattle populations estimated by pedigree information. J Anim Sci 2008; 86(3):545–552.
Pienaar L, Neser FWC, Grobler JP, Scholtz MM, MacNeil MD. Pedigree analysis of the Afrikaner cattle breed. Anim Genet Res2015;57:51–56.
Roos L, Hinrichs D, Nissen T, Krieter J. Investigations into genetic variability in Holstein horse breed using pedigree data. Livest Sci 2015; 177:25–32.
Rosendo-Ponce A, Becerril-Pérez CM. Avance en el conocimiento del bovino Criollo Lechero Tropical de México. Eco Rec Agrop 2015; 2(5):233-243.
Santellano-Estrada E, Becerril-Pérez CM, Chang YM, Gianola D, Torres-Hernández G, Ramírez-Valverde R, Domínguez-Viveros J, Rosendo-Ponce A. Caracterización de la lactancia y evaluación genética del ganado Criollo Lechero Tropical utilizando un modelo de regresión aleatoria. Agrociencia2011; 45(2):165-175.
Vicente AA, Carolino N, Gama LT. Genetic diversity in the Lusitano horse breed assessed by pedigree analysis. Livest Sci 2012; 148(1-2):16–25.
Villasmil-Ontiveros Y, Aranguren-Méndez J, Román R, Isea W, Contreras G, Zambrano S, Jordi J. Pedigree analysis in Criollo Limonero. Rev Cient FCV-LUZ 2008; 18(3):284-290.
Yamada Y. The importance of mating systems in the conservation of animal genetic resources. Proceedings of the FAO/UNEP Technical Consultation on Animal Genetic Resources Conservation and Management; Rome, Italy. FAOAnimal Production and Health Paper 24:268-278; 1981.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2017 Revista Colombiana de Ciencias Pecuarias
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
The authors enable RCCP to reprint the material published in it.
The journal allows the author(s) to hold the copyright without restrictions, and will allow the author(s) to retain publishing rights without restrictions.