Genómica y bioinformática: sus aplicaciones en salud y producción animal

  • Nélida Rodríguez-Osorio Universidad de la República
|Abstract
= 8 veces | PDF (ESPAÑOL (ESPAÑA))
= 100 veces|

Downloads

Download data is not yet available.

References

(NHGRI), N. H. G. R. I. (2019) DNA Sequencing Costs: Data. Disponible en: https://www.genome.gov/about-genomics/factsheets/DNA-Sequencing-Costs-Data.

Altschul, S. F. et al. (1990) «Basic local alignment search tool», Journal of Molecular Biology. doi: 10.1016/S0022-2836(05)80360-2.

Altshuler, D. L. et al. (2010) «A map of human genome variation from population-scale sequencing», Nature. doi: 10.1038/nature09534.

Archibald, A. L. et al. (2010) «Pig genome sequence - analysis and publication strategy», BMC Genomics. doi: 10.1186/1471-2164-11-438.

Auton, A. et al. (2015) «A global reference for human genetic variation», Nature. doi: 10.1038/nature15393.

Bacher, R. y Kendziorski, C. (2016) «Design and computational analysis of single-cell RNA-sequencing experiments», Genome Biology. doi: 10.1186/s13059-016-0927-y.

Baker, L. A. et al. (2017) «Genome-wide association analysis in dogs implicates 99 loci as risk variants for anterior cruciate ligament rupture», PLoS ONE. doi: 10.1371/journal. pone.0173810.

Bouquet, A. y Juga, J. (2013) «Integrating genomic selection into dairy cattle breeding programmes: A review», Animal. doi: 10.1017/S1751731112002248.

Campbell, M. S. et al. (2014) «Genome Annotation and Curation Using MAKER and MAKER-P», Current Protocols in Bioinformatics. doi: 10.1002/0471250953.bi0411s48.

Chernick, A., Godson, D. L. y van der Meer, F. (2014) «Metadata beyond the sequence enables the phylodynamic inference of bovine viral diarrhea virus type 1a isolates from Western Canada», Infection, Genetics and Evolution. doi:10.1016/j.meegid.2014.01.003.

Conte, M. A. et al. (2017) «A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions», BMC Genomics. doi: 10.1186/s12864-017-3723-5.

Costa-Silva, J., Domingues, D. y Lopes, F. M. (2017) «RNASeq differential expression analysis: An extended review and a software tool», PLoS ONE. doi: 10.1371/journal.pone.0190152.

Craig Venter, J. et al. (2001) «The sequence of the human genome», Science. doi: 10.1126/science.1058040.

Dedov, I. I. (2019) «Personalized medicine», Vestnik Rossiiskoi Akademii Meditsinskikh Nauk. doi: 10.15690/vramn1108.

Dobin, A. et al. (2013) «STAR: Ultrafast universal RNA-seq aligner», Bioinformatics. doi: 10.1093/bioinformatics/bts635.

Dupuis, M. C. et al. (2011) «Results of a haplotype-based GWAS for recurrent laryngeal neuropathy in the horse», Mammalian Genome. doi: 10.1007/s00335-011-9337-3.

Elsik, C. G. et al. (2009) «The genome sequence of taurine cattle: A window to ruminant biology and evolution», Science. doi: 10.1126/science.1169588.

Flusberg, B. A. et al. (2010) «Direct detection of DNA methylation during single-molecule, real-time sequencing», Nature Methods. doi: 10.1038/nmeth.1459.

Fonseca, N. A. et al. (2012) «Tools for mapping highthroughput sequencing data», Bioinformatics. doi: 10.1093/bioinformatics/bts605.

Hoenen, T. et al. (2016) «Nanopore sequencing as a rapidly deployable Ebola outbreak tool», Emerging Infectious Diseases. doi: 10.3201/eid2202.151796.

Illumina (2016) «BovineSNP50 Genotyping BeadChip», Http://Www. Illumina.Com/Documents/Products/Datasheets/Datasheet_Bovine_Snp50.Pdf.

International Chicken Genome Sequencing Consortium (2004) «Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution», Nature. doi: 10.1038/nature03154.

Karlsson, E. K. et al. (2013) «Genome-wide analyses implicate 33 loci in heritable dog osteosarcoma, including regulatory variants near CDKN2A/B», Genome Biology. doi: 10.1186/gb-2013-14-12-r132.

Kim, D., Langmead, B. y Salzberg, S. L. (2015) «HISAT: A fast spliced aligner with low memory requirements», Nature Methods. doi: 10.1038/nmeth.3317.

Kim, M., Park, T. y Yu, Z. (2017) «Metagenomic investigation of gastrointestinal microbiome in cattle», Asian-Australasian Journal of Animal Sciences. doi: 10.5713/ajas.17.0544.

Koopaee, H. K. y Koshkoiyeh, A. E. (2014) «SNPs genotyping technologies and their applications in farm animals breeding Programs: Review», Brazilian Archives of Biology and Technology. doi: 10.1590/S1516-89132014000100013.

Lander, E. S. et al. (2001) «Initial sequencing and analysis of the human genome», Nature. doi: 10.1038/35057062.

Law, C. W. et al. (2014) «Voom: Precision weights unlock linear model analysis tools for RNA-seq read counts», Genome Biology. doi: 10.1186/gb-2014-15-2-r29.

Li, R. W. (2015) «Rumen metagenomics», en Rumen Microbiology: From Evolution to Revolution. doi: 10.1007/978-81-322-2401-3_16.

Lindblad-Toh, K. et al. (2005) «Genome sequence, comparative analysis and haplotype structure of the domestic dog», Nature. doi: 10.1038/nature04338.

Lister, R. et al. (2008) «Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis», Cell. doi: 10.1016/j.cell.2008.03.029.

Love, M. I., Anders, S. y Huber, W. (2014) Differential analysis of count data - the DESeq2 package, Genome Biology. doi: 110.1186/s13059-014-0550-8.

Mardis, E. R. (2008) «Next-Generation DNA Sequencing Methods», Annual Review of Genomics and Human Genetics. doi: 10.1146/annurev.genom.9.081307.164359.

Masic, I. (2016) «The most influential scientists in the development of medical informatics (13): Margaret Belle Dayhoff», Acta Informatica Medica. doi: 10.5455/aim.2016.24.299-299.

McKusick, V. A. y Ruddle, F. H. (1987) «A new discipline, a new name, a new journal», Genomics. doi: 10.1016/0888-7543(87)90098-X.

Morgavi, D. P. et al. (2013) «Rumen microbial (meta)genomics and its application to ruminant production», en Animal. doi: 10.1017/S1751731112000419.

Nagalakshmi, U. et al. (2008) «The transcriptional landscape of the yeast genome defned by RNA sequencing», Science. doi: 10.1126/science.1158441.

Navajas, E. et al. (2014) «Genetic improvement of feed efciency and carcass and meat quality of hereford cattle by genomics.», en 60th International Congress of Meat Science and Technology.

NCBI (2019) NCBI genome database, Ncbi. Disponible en: https://www.ncbi.nlm.nih.gov/genome/ (Accedido: 20 de agosto de 2019).

Pearson, W. R. y Lipman, D. J. (1988) «Improved tools for biological sequence comparison.», Proceedings of the National Academy of Sciences of the United States of America. doi: 10.1073/pnas.85.8.2444.

Periasamy, K. et al. (2014) «Candidate gene approach for parasite resistance in sheep - Variation in immune pathway genes and association with fecal egg count», PLoS ONE. doi: 10.1371/journal.pone.0088337.

Pevzner, P. A., Tang, H. y Waterman, M. S. (2001) «An Eulerian path approach to DNA fragment assembly», Proceedings of the National Academy of Sciences of the United States of America. doi: 10.1073/pnas.171285098.

Poirion, O. B. et al. (2016) «Single-cell transcriptomics bioinformatics and computational challenges», Frontiers in Genetics. doi: 10.3389/fgene.2016.00163.

Pryce, J. E. et al. (2014) «Genomic selection for feed efciency in dairy cattle», Animal. doi: 10.1017/S1751731113001687.

Puniya, A. K., Singh, R. y Kamra, D. N. (2015) Rumen microbiology: From evolution to revolution, Rumen Microbiology: From Evolution to Revolution. doi: 10.1007/978-81-322-2401-3.

Richardson, I. W. et al. (2016) «A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifes a susceptibility QTL on chromosome 23», Genetics Selection Evolution. doi: 10.1186/s12711-016-0197-x.

Robinson, M. D., McCarthy, D. J. y Smyth, G. K. (2009) «edgeR: A Bioconductor package for differential expression analysis of digital gene expression data», Bioinformatics. doi: 10.1093/bioinformatics/btp616.

Roche, B. et al. (2014) «Adaptive Evolution and Environmental

Durability Jointly Structure Phylodynamic Patterns in Avian Influenza Viruses», PLoS Biology. doi: 10.1371/journal.pbio.1001931.

Rodriguez-Osorio, N. et al. (2009) «Transcriptional reprogramming of gene expression in bovine somatic cell chromatin transfer embryos», BMC Genomics, 10. doi: 10.1186/1471-2164-10-190.

Sanger, F., Nicklen, S. y Coulson, A. R. (1977) «DNA sequencing with chain-terminating inhibitors.», Proceedings of the National Academy of Sciences of the United States of America. doi: 10.1073/pnas.74.12.5463.

Singh, K. M. et al. (2012) «Metagenomic analysis of Surti buffalo (Bubalus bubalis) rumen: A preliminary study», Molecular Biology Reports. doi: 10.1007/s11033-011-1278-0.

Staden, R. (1977) «Sequence data handling by computer», Nucleic Acids Research. doi: 10.1093/nar/4.11.4037.

Tenenbaum, S. A. et al. (2000) «Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays», Proceedings of the National Academy of Sciences of the United States of America. doi: 10.1073/pnas.97.26.14085.

Trapnell, C., Pachter, L. y Salzberg, S. L. (2009) «TopHat: Discovering splice junctions with RNA-Seq», Bioinformatics. doi: 10.1093/bioinformatics/btp120.

Wiggans, G. R. et al. (2017) «Genomic Selection in Dairy Cattle: The USDA Experience», Annual Review of Animal Biosciences. doi: 10.1146/annurev-animal-021815-111422.

Zarraonaindia, I., Smith, D. P. y Gilbert, J. A. (2013) «Beyond the genome: Community-level analysis of the microbial world», Biology and Philosophy. doi: 10.1007/s10539-012-9357-8.

Published
2019-10-30
Section
Conferencias magistrales