A machine learning approach to support deep brain stimulation programming

Authors

  • Viviana Gómez-Orozco Technological University of Pereira
  • Iván De La Pava Technological University of Pereira https://orcid.org/0000-0003-2593-2501
  • Andrés Álvarez-Meza National University of Colombia
  • Mauricio A. Álvarez University of Sheffield
  • Álvaro Orozco-Gutiérrez Technological University of Pereira https://orcid.org/0000-0002-1167-1446

DOI:

https://doi.org/10.17533/udea.redin.20190729

Keywords:

volume of tissue activated, kernel-based learning, anisotropy

Abstract

Adjusting the stimulation parameters is a challenge in deep brain stimulation (DBS) therapy due to the vast number of different configurations available. As a result, systems based on the visualization of the volume of tissue activated (VTA) produced by a particular stimulation setting have been developed. However, the medical specialist still has to search, by trial and error, for a DBS set-up that generates the desired VTA. Therefore, our goal is developing a DBS parameter tuning strategy for current clinical devices that allows defining a target VTA under biophysically viable constraints. We propose a machine learning approach that allows estimating the DBS parameter values for a given VTA, which comprises two main stages: i) A K-nearest neighbors-based deformation to define a target VTA preserving biophysically viable constraints. ii) A parameter estimation stage that consists of a data projection using metric learning to highlight relevant VTA properties, and a regression/classification algorithm to estimate the DBS parameters that generate the target VTA. Our methodology allows setting a biophysically compliant target VTA and accurately predicts the required configuration of stimulation parameters. Also, the performance of our approach is stable for both isotropic and anisotropic tissue conductivities. Furthermore, the computational time of the trained system is acceptable for real-world implementations.

|Abstract
= 724 veces | PDF
= 435 veces| | HTML
= 0 veces|

Downloads

Download data is not yet available.

Author Biographies

Viviana Gómez-Orozco, Technological University of Pereira

Associate Professor of Engineering. Automatic Research Group, Faculty of Engineering.

Iván De La Pava, Technological University of Pereira

Associate Professor of Engineering. Automatic Research Group, Faculty of Engineering. 

Andrés Álvarez-Meza, National University of Colombia

Associate Professor of Engineering. Signal Processing and Recognition Group.

Mauricio A. Álvarez, University of Sheffield

Engineering Associate Research Professor. Department of Computer Science.

Álvaro Orozco-Gutiérrez, Technological University of Pereira

Associate Professor of Engineering. Automatic Research Group, Faculty of Engineering.

References

D. Cunha and et al , “Toward sophisticated basal ganglia neuromodulation: Review on basal ganglia deep brain stimulation,” Neuroscience & Biobehavioral Reviews , vol. 58, pp. 186–210, Nov. 2015.

C. C. McIntyre and R. W. Anderson, “Deep brain stimulation mechanisms: the control of network activity via neurochemistry modulation,” Journal of Neurochemistry , vol. 139, no. S1, pp. 338–345, 2016.

K. L. Collins, E. M. Lehmann, and P. G. Patil, “Deep brain stimulation for movement disorders,” Neurobiology of Disease , vol. 38, no. 3, pp. 338–345, 2010.

M. S. Okun, “Deep-brain stimulation for Parkinson’s disease,” New England Journal of Medicine , vol. 367, no. 16, pp. 1529–1538, 2012.

X. Chen, Y. Xiong, G. Xu, and X. Liu, “Deep brain stimulation,” Interventional Neurology , vol. 1, no. 3-4, pp. 200–212, 2013.

T. E. Schlaepfer, B. H. Bewernick, S. Kayser, B. Mädler, and V. A. Coenen, “Rapid effects of deep brain stimulation for treatment-resistant major depression,” BiologicalPsychiatry , vol. 73, no. 12, pp. 1204–1212, 2013.

N. G. Laxpati, W. S. Kasoff, and R. E. Gross, “Deep brain stimulation for the treatment of epilepsy: circuits, targets, and trials,” Neurotherapeutics , vol. 11, no. 3, pp. 508–526, 2014.

D. R. Cleary, A. Ozpinar, A. M. Raslan, and A. L. Ko, “Deep brain stimulation for psychiatric disorders: where we are now,” Neurosurgical Focus , vol. 38, no. 6, p. E2, 2015.

A. Veerakumar and O. Berton, “Cellular mechanisms of deep brain stimulation: activity-dependent focal circuit reprogramming?” Current Opinion in Behavioral Sciences , vol. 4, pp. 48–55, 2015.

A. A. Kühn and J. Volkmann, “Innovations in deep brain stimulation methodology,” Movement Disorders , vol. 32, no. 1, pp. 11–19, 2017.

S. Miocinovic, S. Somayajula, S. Chitnis, and J. L. Vitek, “History, applications, and mechanisms of deep brain stimulation,” JAMA neurology , vol. 70, no. 2, pp. 163–171, 2013.

K. Hunka, O. Suchowersky, S. Wood, L. Derwent, and Z. H. Kiss, “Nursing time to program and assess deep brain stimulators in movement disorder patients,” Journal of Neuroscience Nursing , vol. 37, no. 4, p. 204, 2005.

J. Volkmann, E. Moro, and R. Pahwa, “Basic algorithms for the programming of deep brain stimulation in Parkinson’s disease,” Movement Disorders , vol. 21, no. S4, pp. S284–S289, 2006.

M. Astrom and et al , “Method for patient-specific finite element modeling and simulation of deep brain stimulation,” Medical & Biological Engineering & Computing , vol. 47, no. 1, pp. 21–28, 2009.

M. H. Pourfar and et al , “Model-based deep brain stimulation programming for Parkinson’s disease: the GUIDE pilot study,” Stereotactic and Functional Neurosurgery , vol. 93, no. 4, pp. 231–239, 2015.

C. R. Butson and C. C. McIntyre, “Tissue and electrode capacitance reduce neural activation volumes during deep brain stimulation,” Clinical Neurophysiology , vol. 116, no. 10, October 2005. [Online]. Available: https://doi.org/10.1016/j.clinph.2005.06.023

C. Butson, A. Noecker, C. Maks, and C. C. McIntyre, “StimExplorer: deep brain stimulation parameter selection software system,” Acta Neurochirurgica. Supplement , vol. 97, no. pt2, pp. 569–74, 2007.

N. Yousif, R. Borisyuk, N. Pavese, D. Nandi, and P. Bain, “Spatiotemporal visualization of deep brain stimulation-induced effects in the subthalamic nucleus,” European Journal of Neuroscience , vol. 36, no. 2, July 2012. [Online]. Available: https://doi.org/10.1111/j.1460-9568.2012.08086.x

N. Yousif and et al , “Evaluating the impact of the deep brain stimulation induced electric field on subthalamic neurons: A computational modelling study,” Journal of Neuroscience Methods , vol. 188, no. 1, April 30 2010. [Online]. Available: https://doi.org/10.1016/j.jneumeth.2010.01.026

P. M. Lauro and et al , “DBSproc: an open source process for DBS electrode localization and tractographic analysis,” HumanBrain Mapping , vol. 37, no. 1, pp. 422–433, 2016.

C. R. Butson, S. E. Cooper, J. M. Henderson, and C. C. McIntyre, “Patient-specific analysis of the volume of tissue activated during deep brain stimulation,” Neuroimage , vol. 34, no. 2, January 15 2007. [Online]. Available: https://doi.org/10.1016/j.neuroimage.2006.09.034

T. A. Dembek and et al , “Probabilistic mapping of deep brain stimulation effects in essential tremor,” NeuroImage: Clinical , vol. 13, pp. 164–173, 2017.

A. M. Frankemolle and et al , “Reversing cognitive-motor impairments in Parkinson’s disease patients using a computational modelling approach to deep brain stimulation programming,” Neuroimage , vol. 133, no. 3, March 2010. [Online]. Available: https://doi.org/10.1093/brain/awp315

C. R. Butson and C. C. McIntyre, “Current steering to control the volume of tissue activated during deep brain stimulation,” Brain Stimulation , vol. 1, no. 1, pp. 7–15, 2008.

A. Chaturvedi, C. R. Butson, S. F. Lempka, S. E. Cooper, and C. C. McIntyre, “Patient-specific models of deep brain stimulation: influence of field model complexity on neural activation predictions,” Brain Stimulation , vol. 3, no. 2, pp. 65–77, 2010.

G. Walckiers, B. Fuchs, J. P. Thiran, J. R. Mosig, and C. Pollo, “Influence of the implanted pulse generator as reference electrode in finite element model of monopolar deep brain stimulation,” Journal of Neuroscience Methods , vol. 186, no. 1, pp. 90–96, 2010.

T. C. Zhang and W. M. Grill, “Modeling deep brain stimulation: point source approximation versus realistic representation of the electrode,” Journal of Neural Engineering , vol. 7, no. 6, December 2010. [Online]. Available: https://doi.org/10.1088/1741-2560/7/6/066009

K. J. Van Dijk and et al , “A novel lead design enables selective deep brain stimulation of neural populations in the subthalamic region,” Journal of Neural Engineering , vol. 12, no. 4, p. 046003, 2015.

B. Howell and C. C. McIntyre, “Analyzing the tradeoff between electrical complexity and accuracy in patient-specific computational models of deep brain stimulation,” Journal of Neural Engineering , vol. 13, no. 3, p. 036023, 2016.

C. R. Butson and C. C. McIntyre, “Role of electrode design on the volume of tissue activated during deep brain stimulation,” Journal of Neural Engineering , vol. 3, no. 1, March 2006. [Online]. Available: https://doi.org/10.1088/1741-2560/3/1/001

E. Peterson, O. Izad, and D. J. Tyler, “Predicting myelinated axon activation using spatial characteristics of the extracellular field,” Journal of Neural Engineering , vol. 8, no. 4, p. 046030, 2011.

M. Astrom, E. Diczfalusy, H. Martens, and K. Wardell, “Relationship between neural activation and electric field distribution during deep brain stimulation,” IEEE Trans. Biomed. Eng. , vol. 62, no. 2, February 2015. [Online]. Available: https://doi.org/10.1109/TBME. 2014.2363494

A. Chaturvedi, J. L. Luján, and C. C. McIntyre, “Artificial neural network based characterization of the volume of tissue activated during deep brain stimulation,” Journal of Neural Engineering , vol. 10, no. 5, October 2013. [Online]. Available: https://doi.org/10.1088/1741-2560/10/5/056023

I. De La Pava and et al , “A hierarchical K-nearest neighbor approach for volume of tissue activated estimation,” in IberoamericanCongress on Pattern Recognition , Lima, Perú, 2016, pp. 125–133.

M. F. Contarino and et al , “Directional steering: A novel approach to deep brain stimulation,” Neurology , vol. 83, no. 13, pp. 1163–1169, 2014.

M. Hariz, “Deep brain stimulation: new techniques,” Parkinsonism& Related Disorders , vol. 20, no. 13, pp. S192–S196, 2014.

C. Pollo and et al , “Directional deep brain stimulation: an intraoperative double-blind pilot study,” Brain , vol. 137, no. pt7, pp. 2015–2026, 2014.

V. Gómez and et al , “A kernel-based approach for DBS parameter estimation,” in Iberoamerican Congresson Pattern Recognition , Lima, Perú, 2016, pp. 158–166.

E. Peña, S. Zhang, S. Deyo, Y. Xiao, and M. D. Johnson, “Particle swarm optimization for programming deep brain stimulation arrays,” JournalofNeuralEngineering , vol. 14, no. 1, p. 016014, 2017.

C. Cortes, M. Mohri, and A. Rostamizadeh, “Algorithms for learning kernels based on centered alignment,” Journal of Machine Learning Research , vol. 13, no. 1, pp. 795–828, 2012.

D. Cárdenas, D. Collazos, A. Álvarez, and G. Castellanos, “Algorithms for learning kernels based on centered alignment,” Engineering Applications of Artificial Intelligence , vol. 68, pp. 10–17, 2018.

B. Schölkopf and A. J. Smola, Learning with kernels: support vector machines, regularization, optimization, and beyond . Cambridge, USA: MIT press, 2001.

A. Machado and et al , “Deep brain stimulation for Parkinson’s disease: surgical technique and perioperative management,” Movement Disorders , vol. 21, no. S14, pp. S247–S258, 2006.

L. C. Chang, D. K. Jones, and C. Pierpaoli, “ARESTORE: robust estimation of tensors by outlier rejection,” Magnetic Resonance in Medicine , vol. 53, no. 5, May 2005. [Online]. Available: https://doi.org/10.1002/mrm.20426

D. S. Tuch, V. J. Wedeen, A. M. Dale, J. S. George, and J. W. Belliveau, “Conductivity tensor mapping of the human brain using diffusion tensor MRI,” in Proceedings of the National Academy of Sciences , USA, 2001, pp. 11 697–11 701.

O. C. Zienkiewicz, R. L. Taylor, and J. Zhu, Finite Element Method: Its Basis and Fundamentals . Elsevier, Incorporated, 2013.

C. C. McIntyre, A. G. Richardson, and W. M. Grill, “Modeling the excitability of mammalian nerve fibers: influence of afterpotentials on the recovery cycle,” Journal of Neurophysiology , vol. 87, no. 2, pp. 995–1006, 2002.

M. L. Hines, A. P. Davison, and E. Muller, “NEURON and Python,” Frontiers in Neuroinformatics , January 28 2009. [Online]. Available: https://doi.org/10.3389/neuro.11.001.2009

J. Pizarro, E. Guerrero, and P. L. Galindo, “Multiple comparison procedures applied to model selection,” Neurocomputing , vol. 48, no. 1-4, pp. 155–173, 2002.

M. Okun and P. Zeilman, “Parkinson’s disease: Guide to deep brain stimulation therapy. Hagerstown, MD: National Parkinson Foundation,” 2017.

Downloads

Published

2020-12-10

How to Cite

Gómez-Orozco, V., De La Pava, I., Álvarez-Meza, A., Álvarez, M. A., & Orozco-Gutiérrez, Álvaro. (2020). A machine learning approach to support deep brain stimulation programming. Revista Facultad De Ingeniería Universidad De Antioquia, (95), 20–33. https://doi.org/10.17533/udea.redin.20190729

Most read articles by the same author(s)